Leiden University

LIACS Thesis Repository

Leiden University

These webpages contain theses and reports by students affiliated with the various bachelor and master programmes offered at the Leiden Institute of Advanced Computer Science (LIACS), the computer science and artificial intelligence department of Leiden University.

Note: the overview per supervisor is likely partially incomplete.


Year Student ThesisSupervisorsProgrammeContent
2024‑2025Romeijn, L. (Luuk)LncRNA-BERT: An RNA Language Model for Classifying Coding and Long Non...Wolstencroft, dr. K.J., H. MeiCS
2024‑2025Verwei, N. (Nino)End-to-end Tool for DDEG Analysis and Network Inference Using Time Ser...Wolstencroft, dr. K.J., Dr. P. DingCS
2024‑2025Bouwman, E.C.T.D. (Emma)Comparing Neurodegenerative Disorders: Discovering Patterns Through Pr...Wolstencroft, dr. K.J., Cao, dr. L.BioInf
2024‑2025Honders, S. (Suzanne)Integrating Protein-Protein Interactions and Genetic Associations in H...Wolstencroft, dr. K.J., Cao, dr. L.BioInf
2023‑2024Dijk, L. van (Leoni)Transferring Knowledge from Common to Rare Diseases via a Genetic Algo...Dr. E. Mina, Wolstencroft, dr. K.J.CS
2023‑2024Palou I Tort, M. (Mireia) Filling Gaps in Huntington’s Disease Understanding with Alzheimer’...Mina, Wolstencroft, dr. K.J., RosinachCS
2023‑2024Schuckert, L. (Lilli)Sampling protein sequence space to map global distributions of protein...Schultes, Wolstencroft, dr. K.J.CS
2023‑2024Vijfwinkel. D. (Daan)Modeling the Effects of Matrix Metalloproteinase on Stressed Extracell...Prof.dr. R.M.H. Merks, Wolstencroft, dr. K.J., K.A.E. Keijzer MScCS
2023‑2024Baumgart, A. (Aleksandra)Exploring Differences in ACMG Pathogenic Variants Among Diverse Popula...Wolstencroft, dr. K.J., SelbCS
2023‑2024Marchiori Dias, J.C. (Julio Cesar)Improving the Estimation of Age at Onset for Huntington’s Disease th...Wolstencroft, dr. K.J., Eleni MinaCS
2023‑2024Zwart, R. (Rosa)Foundational Ontologies to Improve the Explainability of Explainable A...Wolstencroft, dr. K.J., Annika JacobsenCS
2023‑2024Deen, L. (Luuk)ZebraVishualizer: A Tool for 3D Cell Trajectory Annotation and Visuali...Cao, dr. L., Wolstencroft, dr. K.J.BioInf
2023‑2024Gijsbert, R. (Robert) ZebrafishualizerCao, dr. L., Wolstencroft, dr. K.J.BioInf
2022‑2023Huang, MingyuThe Design of Ontology Based Access Control for Virus Outbreak Data Ne...Ramackers, dr. G.J., Wolstencroft, dr. K.J.IiB&PS
2022‑2023Plas, L. van der (Leendert)Pandemic Pandemonium in de GGD: towards FAIR Data in HealthVeen van, P.M., Wolstencroft, dr. K.J.IiB&PS
2022‑2023Reep, C. (Carmen)Automated drug repurposing workflow for rare diseasesdr. E. Mina, dr. N. Queralt Rosinach, Wolstencroft, dr. K.J.CS
2022‑2023Cremers, KarolisStructured review on Huntington's disease hypothesisNuria Queralt-Rosinach, Wolstencroft, dr. K.J., Elina MinaCS
2022‑2023Boer, A.M. de (Aster)Identifying Overlapping Processes of Alzheimer’s and Huntington’s ...Wolstencroft, dr. K.J., Cao, dr. L.BioInf
2022‑2023Brouwer, B. (Benthe)Impact of GO evolution on covid-19 resultsWolstencroft, dr. K.J., Cao, dr. L.BioInf
2022‑2023Grondelle, K. van (Kim)A Comparative Omics Approach To Understanding Huntington’s Disease N...Wolstencroft, dr. K.J., Cao, dr. L.BioInf
2022‑2023Meyer, T. (Tomke)Early Detection of Celiac Disease in ChildrenWolstencroft, dr. K.J.BioInf
2022‑2023Yousufi, N. (Noria)Functional profiling of Alzheimer’s through a consensus networkWolstencroft, dr. K.J.BioInf
2021‑2022Kok, R.A Cell-Based Model of Angiogenesis Suggests That Vascular Stabilisatio...Mentens, prof.dr.ir. N., Wolstencroft, dr. K.J.CS
2021‑2022Palma, A.Learning perturbation responses in high-throughput morphological assay...Wolstencroft, dr. K.J., Mohammad LotfollahiCS
2021‑2022Perdomo Quinteiro, P.DMD Drug Repurposing using Knowledge Graphs and eXplainable AIWolstencroft, dr. K.J., Núria Queralt RosinachCS
2021‑2022Zhao, M.[Integrating transcriptomic sequencing data at single-cell/nucleus lev...Wolstencroft, dr. K.J., Anita van den HeuvelCS
2021‑2022Aydin, A. (Aylin)Ethical Discussion on Current Protocols for Crohn’s Disease in the U...Cao, dr. L., Wolstencroft, dr. K.J.BioInf
2021‑2022Burg, K. (Koen) van derIdentifying key genes in CRC patients to predict efficacy of CAPOX tre...Wolstencroft, dr. K.J., C. PlattnerBioInf
2021‑2022Jiang, C.J.R. (Chen)Finding Consensus Knowledge in the Huntington’s Disease PathwayWolstencroft, dr. K.J., Cao, dr. L.BioInf
2021‑2022Yarim, M. (Metin)Bioinformatics Analysis of the Core Hallmarks of Cancer GenesWolstencroft, dr. K.J.BioInf
2021Stork, L. (Lise)Knowledge Extraction from Archives of Natural History CollectionsPlaat, prof.dr. A., Verbeek, prof.dr.ir. F.J., Wolstencroft, dr. K.J.PhD
2020‑2021Hadi, PutuImproving Satu Data Indonesia With FAIR Elements: A Model to Extend Sa...Reisen, Wolstencroft, dr. K.J.IiB&PS
2020‑2021Lin, Yi A FAIR Data Based BI Framework within the Healthcare Domain in AfricaReisen, Wolstencroft, dr. K.J.IiB&PS
2020‑2021Li, YijiaImage segmentation using regression models, fuzzy c-means clustering, ...Cao, dr. L., Wolstencroft, dr. K.J.CS
2020‑2021Ouwerkerk, JasperPredicting Disease Progression in Huntington’s DiseaseWolstencroft, dr. K.J.CS
2020‑2021Walen, RubenIntersegmental RNA-RNA interactions in influenza A virus genomes: a bi...Goultiaev, dr. A.P., Wolstencroft, dr. K.J.CS
2020‑2021Mandloi, TusharFAIRification of genetic data and comparison of breast cancer and norm...Wolstencroft, dr. K.J.CS
2020‑2021Belle, N. (Niels) vanThe Bioinformatic Search for ENOD40 Genes in the Rosales Order and Pos...Goultiaev, dr. A.P., Wolstencroft, dr. K.J.BioInf
2020‑2021Vijfvinkel, D. (Daan)Discovery of ENOD40 RNA in PoaceaeGoultiaev, dr. A.P., Wolstencroft, dr. K.J.BioInf
2020‑2021Biesot, N. (Nienke)Actionable Pharmacogenomic Variation Present in the General PopulationWolstencroft, dr. K.J., Goultiaev, dr. A.P.BioInf
2020‑2021Freeke, K. (Karl)Exploring Hallmark Connections through Pathway Enrichment in a Cancer ...Wolstencroft, dr. K.J.BioInf
2020‑2021Homma, R. (Rutger)Exploring the Feasibility of Pharmacogenomic Data AnalysisWolstencroft, dr. K.J.BioInf
2020‑2021Kossen, D. (Dylan)Network Analysis of polyQ Proteins in the Human BrainWolstencroft, dr. K.J.BioInf
2019‑2020Huo, MingyueThe adoption and acceptance of the FAIR principles: Digital health in ...Reisen, Wolstencroft, dr. K.J.IiB&PS
2019‑2020Lieuw-Hie, GivanIdentifying the determinants of the adoption process of personal digit...Reisen, Wolstencroft, dr. K.J.IiB&PS
2019‑2020Aktau, AliyaDesigning a FAIR Data point for Digital Health in Kazakhstan Prof.dr. M.E.H. van Reisen, Wolstencroft, dr. K.J.CS
2019‑2020Bouland, GerardLinking genetic variants to proteomics in Gyrus Temporalis Medialis s...Wolstencroft, dr. K.J., Marcel ReindersCS
2019‑2020Spaink, HermesIdentifying a Novel Class of Cancer Dependencies: Paralog Genes Intera...Wolstencroft, dr. K.J., N.V. DhariaCS
2019‑2020Wijnbergen, DaniëlComparison of expression deconvolution methodsWolstencroft, dr. K.J., Prof. Dr. D.J.M. PetersCS
2019‑2020Cheung, M. (Menco)Mining Structural Patterns in a Non-coding RNA Related to Influenza Vi...Goultiaev, dr. A.P., Wolstencroft, dr. K.J.BioInf
2019‑2020Engwegen, L.R. (Laurens)Investigating the Hallmarks of Cancer Using Protein-Protein Interactio...Wolstencroft, dr. K.J.BioInf
2019‑2020Heijnen, L.S.E.M. (Lucas)Revisiting the Evolution and Function of Polyglutamine RepeatsWolstencroft, dr. K.J., Goultiaev, dr. A.P.BioInf
2019‑2020Janssens, L.M.I. (Luka)A Network Analysis Approach to Studying PolyQ Protein InteractionsWolstencroft, dr. K.J., Takes, prof.dr. F.W.BioInf
2019‑2020Nuijten, P. (Pascal)The Relationship Between Prognostic Genes in Human and Mouse CancerWolstencroft, dr. K.J.BioInf
2018‑2019Dimitriadis, PetrosPredicting Graft Survival in Kidney Transplantation using Neural Netwo...Wolstencroft, dr. K.J., dr. J.H.N. Lindeman, Goultiaev, dr. A.P.CS
2016‑2017Cames van Batenburg D.F. J.Identificaton of Transposable Element Insertion into the enod40 RNAGoultiaev, dr. A.P., Wolstencroft, dr. K.J.Inf
2016‑2017Draijer W.J.W. (Wilco)Integrating, Structuring and Visualising Cancer DataWolstencroft, dr. K.J., Verbeek, prof.dr.ir. F.J.Inf
2014‑2015Scholtes, S. (Sem)Integrating Data Modeling with Data Analysis in Taverna WorkflowsWolstencroft, dr. K.J., Verbeek, prof.dr.ir. F.J.Inf