LIACS Thesis Repository
These webpages contain theses and reports by students affiliated with the various bachelor and master programmes offered at the Leiden Institute of Advanced Computer Science
(LIACS),
the computer science and artificial intelligence department of Leiden University.
Note: this thesis repository might be incomplete for certain programmes and years.
Bachelor Bioinformatica
2024-2025
| Student | Thesis | Content |
|---|---|---|
| Bouwman, E.C.T.D. (Emma) | Comparing Neurodegenerative Disorders: Discovering Patterns Through Protein-Protein Interaction Network Analysis | |
| Rosmolen, A. (Aart) & Eerde, E.R. van (Emma) | Prediction of Leprosy Susceptibility from an RNA-seq Population Study | |
| Zee, D.F. (Daniel) | Integrating ARISE Fungal ITS Data in the MycoDiversity Database for Biodiversity Analysis |
2023-2024
| Student | Thesis | Content |
|---|---|---|
| Bijl, I. (Imaan) | Measuring the Performance of Different Convolutional Neural Networks and a Swin-transformer Model in Pollen Classification Using 3D Sequential Data | |
| Bijsterveld, J. van (Jens) & Benthum, S.W. van (Sybe) | Automating VAST Imaging for High Throughput and Fluorescence | |
| Deen, L. (Luuk) | ZebraVishualizer: A Tool for 3D Cell Trajectory Annotation and Visualization | |
| Gijsbert, R. (Robert) | Zebrafishualizer | |
| Konijn, T. (Tijs) | The Performance of RetinaNet and Faster R-CNN with Classification on 3D Pollen Images |
2022-2023
2021-2022
| Student | Thesis | Content |
|---|---|---|
| Aydin, A. (Aylin) | Ethical Discussion on Current Protocols for Crohn’s Disease in the Use of CAM Therapies | |
| Burg, K. (Koen) van der | Identifying key genes in CRC patients to predict efficacy of CAPOX treatment | |
| Jiang, C.J.R. (Chen) | Finding Consensus Knowledge in the Huntington’s Disease Pathway | |
| Lin, D. (David) | Gradual OverPy: A Proof of Concept of Applying a Gradual Method on the Overwatch Workshop | |
| Silié, A-J. | 3D mesh optimization strategy for images acquired from Bioimaging | |
| Thiel, H. van (Haike) | Speeding up the multiscale access in the MycoDiversity DataBase | |
| Venemans, W.R.D. (Willem) | Classifying Protein Topology Matrices Using AI | |
| Versluis, R. (Robbert) | Comparing and Improving Different Analysis Workflows for High Compound Screening Data | |
| Yarim, M. (Metin) | Bioinformatics Analysis of the Core Hallmarks of Cancer Genes |
2020-2021
| Student | Thesis | Content |
|---|---|---|
| Belle, N. (Niels) van | The Bioinformatic Search for ENOD40 Genes in the Rosales Order and Possible Insertions of Transposable Elements | |
| Biesot, N. (Nienke) | Actionable Pharmacogenomic Variation Present in the General Population | |
| Boonstra, N.J.L. (Niels) | Is the Linux Completely Fair Scheduler Ready for Serverless Workloads? | |
| Faas, M. (Marije) | Training Logical Operations through Gameplay | |
| Freeke, K. (Karl) | Exploring Hallmark Connections through Pathway Enrichment in a Cancer Gene PPI-network | |
| Homma, R. (Rutger) | Exploring the Feasibility of Pharmacogenomic Data Analysis | |
| Kossen, D. (Dylan) | Network Analysis of polyQ Proteins in the Human Brain | |
| Vijfvinkel, D. (Daan) | Discovery of ENOD40 RNA in Poaceae |
2019-2020
| Student | Thesis | Content |
|---|---|---|
| Cheung, M. (Menco) | Mining Structural Patterns in a Non-coding RNA Related to Influenza Virus Infection and Cancer Development | |
| Engwegen, L.R. (Laurens) | Investigating the Hallmarks of Cancer Using Protein-Protein Interaction Networks | |
| Heijnen, L.S.E.M. (Lucas) | Revisiting the Evolution and Function of Polyglutamine Repeats | |
| Janssens, L.M.I. (Luka) | A Network Analysis Approach to Studying PolyQ Protein Interactions | |
| Nuijten, P. (Pascal) | The Relationship Between Prognostic Genes in Human and Mouse Cancer |
2018-2019
| Student | Thesis | Content |
|---|---|---|
| Boer, W.F.H. (Wilco) de | Evaluation and Improvement of Methods and Models for Segmentation of Zebrafish Larvae | |
| Dekker, L. (Loes) | Optimization of High-Throughput Zebra sh Imaging on a Distributed Computer | |
| Paul, V. (Valerie) | Predicting the Discharge Date of Patients using Classification Techniques | |
| Wesselman, S. (Sjoerd) | The Intestinal Flora of the Zebrafish |
2017-2018
| Student | Thesis | Content |
|---|---|---|
| Spaink, H.A.J. (Hermes) | Age Classification of Zebrafish Larvae using Machine Learning from HOG Features |